prof_pic.jpeg
Yiqiu Shen
Assistant Professor
Department of Radiology
NYU Grossman School of Medicine
Email: ys1001 at nyu dot edu

My research focuses on creating label-efficient and explainable deep learning models for medical imaging to improve clinical workflow and patient care.In particular, I am excited about exploring the following directions:

  • Multimodal learning: How can we efficiently integrate information from different modalities (e.g. imaging, text, tabular data, sequential data) to better inform clinical decisions?
  • Explainable AI: Can we enable computer aided diagnosis systems to explain their reasoning in a way that mimics how humans communicate?
  • Human-AI collaboration: What is the optimal way to present an AI’s diagnosis to clinicians so they can collaborate effectively to maximize patient outcomes?

I received my Ph.D. at the NYU Center for Data Science, advised by Prof. Krzysztof J. Geras and Prof. Kyunghyun Cho. Prior to joining NYU, I worked at Two Sigma Investments. I hold a Bachelor’s degree in Computer Science from Rice University.

Perspective students: Starting in Fall 2026, I am looking for highly motivated Ph.D. students to join my research group. You may apply through NYU Data Science PhD (see the medical AI track) or the Biomedical Imaging & Technology PhD at the NYU Vilcek Institute. For more details, please check out my advising statement . I’m also open to collaborations with predoctoral researchers and visiting scholars. If you are interested in working with me, please drop me an email.

Our work explores exciting frontiers in AI and medical imaging, including:

  • Developing multi-modal deep learning models that integrate medical imaging (across multiple modalities) with clinical data such as EHRs and lab results.
  • Designing counterfactual deep learning approaches to optimize diagnostic and treatment pathways.
  • Building AI systems for video analysis, with applications such as understanding infant psychology development.

news

Sep 12, 2025 My research has been supported by an NIH UF1 Multi-Year Funded Research Project Cooperative Agreement Grant.
Sep 2, 2025 I recevied the 2025 Milstein Pilot Project Fund.
Aug 12, 2025 I received an NIH Research Project (R01) Grant.
Jun 6, 2025 I gave an invited talk at IBDW 2025 .
May 30, 2025 Our paper on optimizing neural network architectures for medical image analysis was published in Machine Learning for Biomedical Imaging .
Oct 31, 2024 Our paper on using large language models to extract structured lesion descriptions from breast ultrasound reports was presented at MCHM 2024 .
Oct 28, 2024 Our review on multi-modal large language models in radiology was published in Abdominal Radiology.
Oct 28, 2024 Our review on AI for the early detection of pancreatic cancer was published in Abdominal Radiology.
Apr 12, 2024 I received the 2024 NYU Outstanding Dissertation Award.
Jun 23, 2023 Our paper in multiple instance learning has been accepted to CVPR 2023.

selected publications

2025

  1. detr.png
    Understanding differences in applying DETR to natural and medical images
    Yanqi Xu, Yiqiu Shen, Carlos Fernandez-Granda, Laura Heacock, and Krzysztof J. Geras
    Machine Learning for Biomedical Imaging, 2025

2024

  1. BURE.png
    Burextract-llama: An llm for clinical concept extraction in breast ultrasound reports
    Yuxuan Chen, Haoyan Yang, Hengkai Pan, Fardeen Siddiqui, Antonio Verdone, and 4 more authors
    In Proceedings of the 1st International Workshop on Multimedia Computing for Health and Medicine, 2024

2023

  1. radiology.jpeg
    ChatGPT and other large language models are double-edged swords
    Yiqiu Shen, Laura Heacock, Jonathan Elias, Keith D Hentel, Beatriu Reig, and 2 more authors
    Radiology, 2023

2021

  1. us.png
    Artificial intelligence system reduces false-positive findings in the interpretation of breast ultrasound exams
    Yiqiu Shen, Farah E Shamout, Jamie R Oliver, Jan Witowski, Kawshik Kannan, and 6 more authors
    Nature communications, 2021
  2. mia.png
    An interpretable classifier for high-resolution breast cancer screening images utilizing weakly supervised localization
    Yiqiu Shen, Nan Wu, Jason Phang, Jungkyu Park, Kangning Liu, and 6 more authors
    Medical image analysis, 2021
  3. covid.jpeg
    An artificial intelligence system for predicting the deterioration of COVID-19 patients in the emergency department
    Farah E Shamout*, Yiqiu Shen*, Nan Wu*, Aakash Kaku*, Jungkyu Park*, and 6 more authors
    NPJ digital medicine, 2021